Index

_

_condition (py3plex.dsl.BooleanExpression attribute)

_field (py3plex.dsl.FieldExpression attribute) _negated (py3plex.dsl.BooleanExpression attribute)

A

accessibility_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] actual_type (py3plex.dsl.TypeMismatchError attribute) add_bipartite_block() (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank method), [1] add_constraint() (py3plex.dsl.PatternGraph method) add_dummy_layers() (py3plex.core.multinet.multi_layer_network method), [1] add_edge() (py3plex.dsl.PatternGraph method) add_edges() (py3plex.core.multinet.multi_layer_network method), [1] add_label() (py3plex.core.HINMINE.dataStructures.HeterogeneousInformationNetwork method), [1] add_layer() (py3plex.dsl.TypeEnvironment method) add_mpx_edges() (in module py3plex.core.supporting), [1] add_multiplex() (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank method), [1] add_node() (py3plex.dsl.PatternGraph method) add_nodes() (py3plex.core.multinet.multi_layer_network method), [1] add_sub_class() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] ADJUST (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] adjustSpeedAndApplyForces() (in module py3plex.visualization.fa2.fa2util), [1] after() (py3plex.dsl.QueryBuilder method) aggregate() (py3plex.dsl.QueryBuilder method) aggregate_centrality_across_layers() (in module py3plex.algorithms.centrality_toolkit) aggregate_edges() (py3plex.core.multinet.multi_layer_network method), [1] aggregate_layers() (in module py3plex.multinet.aggregation), [1] aggregate_scores() (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank method), [1] aggregate_specs (py3plex.dsl.SelectStmt attribute), [1] aggregate_sum() (in module py3plex.core.HINMINE.decomposition), [1] aggregate_to_node_level() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] aggregate_weighted_sum() (in module py3plex.core.HINMINE.decomposition), [1] algebraic_connectivity() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] AlgorithmError, [1]

alias (py3plex.dsl.ComputeItem attribute), [1] all_paths() (py3plex.dsl.P static method) ALPHA (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] any_layer() (py3plex.dsl.EdgeLayerConstraint static method) (py3plex.dsl.PatternEdgeBuilder method) apply_attraction() (in module py3plex.visualization.fa2.fa2util), [1] apply_gravity() (in module py3plex.visualization.fa2.fa2util), [1] apply_repulsion() (in module py3plex.visualization.fa2.fa2util), [1] applyForce() (py3plex.visualization.fa2.fa2util.Region method), [1] applyForceOnNodes() (py3plex.visualization.fa2.fa2util.Region method), [1] args (py3plex.dsl.FunctionCall attribute), [1] arrange() (py3plex.dsl.QueryBuilder method) ARROW (py3plex.dsl.ExportTarget attribute) assign_partition() (py3plex.core.multinet.multi_layer_network method), [1] ast_summary (py3plex.dsl.ExplainResult attribute), [1] at() (py3plex.dsl.QueryBuilder method) (py3plex.dsl.TrajectoriesBuilder method) atoms (py3plex.dsl.ConditionExpr attribute), [1] attr (py3plex.dsl.Predicate attribute), [1] attribute (py3plex.dsl.TypeMismatchError attribute) (py3plex.dsl.UnknownAttributeError attribute) attributes (py3plex.dsl.QueryResult attribute) AttrType (class in py3plex.dsl) authority_matrix() (in module py3plex.algorithms.node_ranking), [1] (in module py3plex.algorithms.node_ranking.node_ranking), [1] AUTO (py3plex.uncertainty.types.UncertaintyMode attribute), [1] (py3plex.uncertainty.UncertaintyMode attribute), [1] autocompute (py3plex.dsl.SelectStmt attribute), [1] autocompute_enabled (py3plex.dsl.DslMissingMetricError attribute)

B

basic_pl_stats() (in module py3plex.algorithms.statistics.topology), [1] basic_random_walk() (in module py3plex.algorithms.general.walkers), [1] basic_stats() (py3plex.core.multinet.multi_layer_network method), [1] BEAM_SIZE (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] before() (py3plex.dsl.QueryBuilder method) benchmark() (in module py3plex.profiling), [1] benchmark_classification() (in module py3plex.algorithms.network_classification), [1] benchmark_node_classification() (in module py3plex.wrappers.benchmark_nodes), [1] best_partition() (in module py3plex.algorithms.community_detection.community_louvain), [1] between() (py3plex.dsl.EdgeLayerConstraint static method) between_layers() (py3plex.dsl.PatternEdgeBuilder method) bezier_calculate_dfy() (in module py3plex.visualization.bezier), [1] BinaryPredicate (class in py3plex.algorithms.hedwig.core.predicate), [1] bindings (py3plex.dsl.MatchRow attribute), [1] bipartite_blocks (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank attribute), [1] bits_to_indices() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] block_matrix (py3plex.core.random_generators.SBMMetadata attribute), [1], [2], [3]

block_memberships (py3plex.core.random_generators.SBMMetadata attribute), [1], [2], [3] BOOLEAN (py3plex.dsl.AttrType attribute) BooleanExpression (class in py3plex.dsl) BOOTSTRAP (py3plex.uncertainty.ResamplingStrategy attribute), [1] (py3plex.uncertainty.types.ResamplingStrategy attribute), [1] bootstrap_metric() (in module py3plex.uncertainty) bootstrap_mode (py3plex.dsl.ComputeItem attribute), [1] bootstrap_unit (py3plex.dsl.ComputeItem attribute), [1] bottom_clause() (py3plex.algorithms.hedwig.learners.bottomup.BottomUpLearner method), [1] BottomUpLearner (class in py3plex.algorithms.hedwig.learners.bottomup), [1] bridging_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] build_graph() (in module py3plex.algorithms.hedwig), [1] build_occurrence_matrix() (in module py3plex.algorithms.multilayer_algorithms.entanglement), [1] build_supra_heterogeneous_matrix() (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank method), [1] build_supra_modularity_matrix() (in module py3plex.algorithms.community_detection.multilayer_modularity), [1] buildSubRegions() (py3plex.visualization.fa2.fa2util.Region method), [1] built-in function discover_plugins()

C

C (class in py3plex.dsl) calculate_decomposition_candidates() (py3plex.core.HINMINE.dataStructures.HeterogeneousInformationNetwork method), [1] calculate_importance_chi() (in module py3plex.core.HINMINE.decomposition), [1] calculate_importance_delta() (in module py3plex.core.HINMINE.decomposition), [1] calculate_importance_gr() (in module py3plex.core.HINMINE.decomposition), [1] calculate_importance_idf() (in module py3plex.core.HINMINE.decomposition), [1] calculate_importance_ig() (in module py3plex.core.HINMINE.decomposition), [1] calculate_importance_okapi() (in module py3plex.core.HINMINE.decomposition), [1] calculate_importance_rf() (in module py3plex.core.HINMINE.decomposition), [1] calculate_importance_tf() (in module py3plex.core.HINMINE.decomposition), [1] calculate_importance_w2w() (in module py3plex.core.HINMINE.decomposition), [1] calculate_importances() (in module py3plex.core.HINMINE.decomposition), [1] calculate_schema() (py3plex.core.HINMINE.dataStructures.HeterogeneousInformationNetwork method), [1] call_node2vec_binary() (in module py3plex.wrappers.train_node2vec_embedding), [1] can_specialize() (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] CATEGORICAL (py3plex.dsl.AttrType attribute) category (py3plex.dsl.DSLOperator attribute), [1] centrality() (py3plex.dsl.QueryBuilder method) CentralityComputationError, [1] certainty (py3plex.uncertainty.CommunityStats property) (py3plex.uncertainty.StatMatrix property) (py3plex.uncertainty.StatSeries property) (py3plex.uncertainty.types.CommunityStats property) (py3plex.uncertainty.types.StatMatrix property) (py3plex.uncertainty.types.StatSeries property) chi_value() (in module py3plex.core.HINMINE.decomposition), [1] chisq() (in module py3plex.algorithms.hedwig.stats.scorefunctions), [1] ci (py3plex.dsl.ComputeItem attribute), [1] (py3plex.dsl.UQConfig attribute), [1] Class (class in py3plex.core.HINMINE.dataStructures), [1] ClassLabeled (py3plex.algorithms.hedwig.core.example.Example attribute), [1] clear() (py3plex.profiling.PerformanceMonitor method), [1] clear_groups() (py3plex.dsl.LayerProxy static method) (py3plex.dsl.LayerSet static method) clone() (py3plex.algorithms.hedwig.core.rule.Rule method), [1] clone_append() (py3plex.algorithms.hedwig.core.rule.Rule method), [1] clone_negate() (py3plex.algorithms.hedwig.core.rule.Rule method), [1] clone_swap_with_subclass() (py3plex.algorithms.hedwig.core.rule.Rule method), [1] cmd_aggregate() (in module py3plex.cli), [1] cmd_centrality() (in module py3plex.cli), [1] cmd_check() (in module py3plex.cli), [1] cmd_community() (in module py3plex.cli), [1] cmd_convert() (in module py3plex.cli), [1] cmd_create() (in module py3plex.cli), [1] cmd_dsl_lint() (in module py3plex.cli), [1] cmd_help() (in module py3plex.cli), [1] cmd_load() (in module py3plex.cli), [1] cmd_query() (in module py3plex.cli), [1] cmd_quickstart() (in module py3plex.cli), [1] cmd_run_config() (in module py3plex.cli), [1] cmd_selftest() (in module py3plex.cli), [1] cmd_stats() (in module py3plex.cli), [1] cmd_tutorial() (in module py3plex.cli), [1] cmd_visualize() (in module py3plex.cli), [1] coassoc (py3plex.uncertainty.CommunityStats attribute) (py3plex.uncertainty.types.CommunityStats attribute) code (py3plex.dsl.Diagnostic attribute), [1] (py3plex.exceptions.Py3plexException attribute), [1] collective_influence() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] color_dict() (in module py3plex.visualization.colors), [1] column_normalize() (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank method), [1] columns (py3plex.dsl.ExportSpec attribute), [1]

communicability_betweenness_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] communicability_centrality() (in module py3plex.algorithms.multilayer_algorithms.centrality), [1] (in module py3plex.algorithms.multilayer_algorithms.supra_matrix_function_centrality), [1], [2] community_participation_coefficient() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] community_participation_entropy() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] CommunityDetectionError, [1] CommunityStats (class in py3plex.uncertainty) (class in py3plex.uncertainty.types) compare (py3plex.dsl.ExtendedQuery attribute), [1] compare() (py3plex.dsl.C static method) CompareBuilder (class in py3plex.dsl) CompareStmt (class in py3plex.dsl) Comparison (class in py3plex.dsl) comparison (py3plex.dsl.ConditionAtom attribute), [1] compile_pattern() (in module py3plex.dsl) compute (py3plex.dsl.SelectStmt attribute), [1] compute() (py3plex.dsl.QueryBuilder method) compute_all_centralities() (in module py3plex.algorithms.multilayer_algorithms.centrality), [1] compute_blocks() (in module py3plex.algorithms.multilayer_algorithms.entanglement), [1] compute_centrality_for_layer() (in module py3plex.dsl) compute_entanglement() (in module py3plex.algorithms.multilayer_algorithms.entanglement), [1] compute_entanglement_analysis() (in module py3plex.algorithms.multilayer_algorithms.entanglement), [1] compute_force_directed_layout() (in module py3plex.visualization.layout_algorithms), [1] compute_layout() (in module py3plex.core.converters), [1] compute_modularity_score() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] compute_ollivier_ricci() (py3plex.core.multinet.multi_layer_network method), [1] compute_ollivier_ricci_flow() (py3plex.core.multinet.multi_layer_network method), [1] compute_random_layout() (in module py3plex.visualization.layout_algorithms), [1] computed_metrics (py3plex.dsl.QueryResult attribute) ComputeItem (class in py3plex.dsl) ConditionAtom (class in py3plex.dsl) ConditionExpr (class in py3plex.dsl) configuration() (py3plex.dsl.N static method) constraint() (py3plex.dsl.PatternQueryBuilder method) constraints (py3plex.dsl.PatternGraph attribute), [1] ConversionError, [1] convert_mapping_to_rdf() (in module py3plex.algorithms.hedwig.core.converters), [1] copy() (py3plex.algorithms.community_detection.community_louvain.Status method), [1] core_network_statistics() (in module py3plex.algorithms.statistics.basic_statistics), [1] correlated_ttest() (in module py3plex.algorithms.statistics.bayesiantests), [1] correlated_ttest_MC() (in module py3plex.algorithms.statistics.bayesiantests), [1] cost_estimate (py3plex.dsl.ExplainResult attribute), [1] count (py3plex.dsl.PatternQueryResult property) (py3plex.dsl.QueryResult property) coverage() (py3plex.dsl.QueryBuilder method) coverage_group (py3plex.dsl.SelectStmt attribute), [1] coverage_id_field (py3plex.dsl.SelectStmt attribute), [1] coverage_k (py3plex.dsl.SelectStmt attribute), [1] coverage_mode (py3plex.dsl.SelectStmt attribute), [1] coverage_p (py3plex.dsl.SelectStmt attribute), [1] COVERED (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] create_label_matrix() (py3plex.core.HINMINE.dataStructures.HeterogeneousInformationNetwork method), [1] create_parser() (in module py3plex.cli), [1] create_tree() (in module py3plex.algorithms.community_detection.community_ranking), [1] cross_layer (py3plex.dsl.PathStmt attribute), [1] cross_layer_mutual_information() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] cross_layer_redundancy_entropy() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] crossing_layers() (py3plex.dsl.PathBuilder method) current_flow_betweenness_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] current_flow_closeness_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] current_layers (py3plex.dsl.DSLExecutionContext attribute), [1] current_nodes (py3plex.dsl.DSLExecutionContext attribute), [1]

D

damping_hyper (in module py3plex.algorithms.node_ranking), [1] DATETIME (py3plex.dsl.AttrType attribute) decompose_from_iterator() (py3plex.core.HINMINE.dataStructures.HeterogeneousInformationNetwork method), [1] DecompositionError, [1] Default (py3plex.algorithms.hedwig.learners.bottomup.BottomUpLearner attribute), [1] (py3plex.algorithms.hedwig.learners.learner.Learner attribute), [1] default() (py3plex.dsl.UQ static method) default_code (py3plex.exceptions.AlgorithmError attribute), [1] (py3plex.exceptions.CentralityComputationError attribute), [1] (py3plex.exceptions.CommunityDetectionError attribute), [1] (py3plex.exceptions.ConversionError attribute), [1] (py3plex.exceptions.DecompositionError attribute), [1] (py3plex.exceptions.EmbeddingError attribute), [1] (py3plex.exceptions.ExternalToolError attribute), [1] (py3plex.exceptions.IncompatibleNetworkError attribute), [1] (py3plex.exceptions.InvalidEdgeError attribute), [1] (py3plex.exceptions.InvalidLayerError attribute), [1] (py3plex.exceptions.InvalidNodeError attribute), [1] (py3plex.exceptions.NetworkConstructionError attribute), [1] (py3plex.exceptions.ParsingError attribute), [1] (py3plex.exceptions.Py3plexException attribute), [1] (py3plex.exceptions.Py3plexFormatError attribute), [1] (py3plex.exceptions.Py3plexIOError attribute), [1] (py3plex.exceptions.Py3plexLayoutError attribute), [1] (py3plex.exceptions.Py3plexMatrixError attribute), [1] (py3plex.exceptions.VisualizationError attribute), [1] default_correlation_to_network() (in module py3plex.algorithms.statistics.correlation_networks), [1] default_n_runs (py3plex.uncertainty.types.UncertaintyConfig attribute), [1] (py3plex.uncertainty.UncertaintyConfig attribute), [1] default_resampling (py3plex.uncertainty.types.UncertaintyConfig attribute), [1] (py3plex.uncertainty.UncertaintyConfig attribute), [1] Defaults (class in py3plex.algorithms.hedwig.core.settings), [1] defaults() (py3plex.dsl.Q.uncertainty class method) define() (py3plex.dsl.LayerProxy static method) define_group() (py3plex.dsl.LayerSet static method) degree_vector() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] degrees (py3plex.algorithms.community_detection.community_louvain.Status attribute), [1] deprecated() (in module py3plex.utils), [1] DEPTH (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] desc (py3plex.dsl.OrderItem attribute), [1] describe_operator() (in module py3plex.dsl) description (py3plex.dsl.DSLOperator attribute), [1] (py3plex.dsl.PlanStep attribute), [1] detect_communities() (in module py3plex.dsl) Diagnostic (class in py3plex.dsl)

diagnostics (py3plex.dsl.ExplainResult attribute), [1] did_you_mean (py3plex.exceptions.Py3plexException attribute), [1] directed (py3plex.dsl.PatternEdge attribute), [1] discover_plugins() built-in function display() (py3plex.visualization.fa2.forceatlas2.Timer method), [1] distinct() (py3plex.dsl.QueryBuilder method) distinct_cols (py3plex.dsl.SelectStmt attribute), [1] draw() (in module py3plex.visualization.drawing_machinery), [1] draw_bezier() (in module py3plex.visualization.bezier), [1] draw_circular() (in module py3plex.visualization.drawing_machinery), [1] draw_kamada_kawai() (in module py3plex.visualization.drawing_machinery), [1] draw_multiedges() (in module py3plex.visualization.multilayer), [1] draw_multilayer_default() (in module py3plex.visualization.multilayer), [1] draw_multilayer_flow() (in module py3plex.visualization.multilayer), [1] draw_multilayer_sankey() (in module py3plex.visualization.sankey), [1] draw_networkx() (in module py3plex.visualization.drawing_machinery), [1] draw_networkx_edge_labels() (in module py3plex.visualization.drawing_machinery), [1] draw_networkx_edges() (in module py3plex.visualization.drawing_machinery), [1] draw_networkx_labels() (in module py3plex.visualization.drawing_machinery), [1] draw_networkx_nodes() (in module py3plex.visualization.drawing_machinery), [1] draw_random() (in module py3plex.visualization.drawing_machinery), [1] draw_shell() (in module py3plex.visualization.drawing_machinery), [1] draw_spectral() (in module py3plex.visualization.drawing_machinery), [1] draw_spring() (in module py3plex.visualization.drawing_machinery), [1] drop() (py3plex.dsl.QueryBuilder method) drop_cols (py3plex.dsl.SelectStmt attribute), [1] dsl_operator() (in module py3plex.dsl) dsl_version (py3plex.dsl.ExtendedQuery attribute), [1] (py3plex.dsl.Query attribute), [1] DslError DSLExecutionContext (class in py3plex.dsl) DSLExecutionError DslExecutionError DslMissingMetricError DSLOperator (class in py3plex.dsl) DSLSyntaxError DslSyntaxError dst (py3plex.dsl.PatternEdge attribute), [1] dst_layer (py3plex.dsl.EdgeLayerConstraint attribute), [1] during() (py3plex.dsl.QueryBuilder method) (py3plex.dsl.TrajectoriesBuilder method) dynamics (py3plex.dsl.ExtendedQuery attribute), [1] dynamics() (py3plex.dsl.Q static method) DynamicsBuilder (class in py3plex.dsl) DynamicsStmt (class in py3plex.dsl)

E

Edge (class in py3plex.visualization.fa2.fa2util), [1] edge() (py3plex.dsl.PatternQueryBuilder method) edge_betweenness_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] edge_bindings (py3plex.dsl.MatchRow attribute), [1] edge_count (py3plex.core.multinet.multi_layer_network property), [1] edge_overlap() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] EDGE_REF (py3plex.dsl.AttrType attribute) edge_swap() (py3plex.dsl.N static method) EdgeLayerConstraint (class in py3plex.dsl) edges (py3plex.dsl.PatternGraph attribute), [1] (py3plex.dsl.QueryResult property) EDGES (py3plex.dsl.Target attribute) edges() (py3plex.dsl.Q static method) edges_from_temporal_table() (py3plex.core.multinet.multi_layer_network method), [1] EmbeddingError, [1] enabled (py3plex.profiling.PerformanceMonitor attribute), [1] end_grouping() (py3plex.dsl.QueryBuilder method) enrichment_score() (in module py3plex.algorithms.hedwig.stats.scorefunctions), [1] ensure() (in module py3plex.algorithms.multicentrality), [1] (in module py3plex.algorithms.statistics.basic_statistics), [1] (in module py3plex.core.converters), [1] (in module py3plex.core.multinet), [1] (in module py3plex.core.nx_compat), [1] (in module py3plex.core.parsers), [1] (in module py3plex.core.random_generators), [1] (in module py3plex.core.supporting), [1] (in module py3plex.io.api), [1] (in module py3plex.multinet.aggregation), [1] (in module py3plex.utils), [1] (in module py3plex.visualization.layout_algorithms), [1] EntityRef (class in py3plex.dsl) entropy_of_multiplexity() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] epsilon (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank attribute), [1] erdos_renyi() (py3plex.dsl.N static method) estimate_uncertainty() (in module py3plex.uncertainty) (in module py3plex.uncertainty.estimation) estimated_complexity (py3plex.dsl.PatternPlan attribute), [1] (py3plex.dsl.PlanStep attribute), [1] etype (py3plex.dsl.PatternEdge attribute), [1] evaluate_oracle_F1() (in module py3plex.algorithms.general.benchmark_classification), [1]

Example (class in py3plex.algorithms.hedwig.core.example), [1] examples() (py3plex.algorithms.hedwig.core.rule.Rule method), [1] execute() (py3plex.dsl.CompareBuilder method) (py3plex.dsl.DynamicsBuilder method) (py3plex.dsl.NullModelBuilder method) (py3plex.dsl.PathBuilder method) (py3plex.dsl.PatternQueryBuilder method) (py3plex.dsl.QueryBuilder method) (py3plex.dsl.TrajectoriesBuilder method) execute_ast() (in module py3plex.dsl) execute_query() (in module py3plex.dsl) (py3plex.core.multinet.multi_layer_network method), [1] ExecutionPlan (class in py3plex.dsl) expected_type (py3plex.dsl.TypeMismatchError attribute) ExperimentKB (class in py3plex.algorithms.hedwig.core.kb), [1] explain (py3plex.dsl.ExtendedQuery attribute), [1] (py3plex.dsl.Query attribute), [1] explain() (in module py3plex.dsl) (py3plex.dsl.LayerSet method) (py3plex.dsl.PatternQueryBuilder method) (py3plex.dsl.QueryBuilder method) ExplainResult (class in py3plex.dsl) export (py3plex.dsl.SelectStmt attribute), [1] export() (py3plex.dsl.QueryBuilder method) export_csv() (py3plex.dsl.QueryBuilder method) export_json() (py3plex.dsl.QueryBuilder method) export_result() (in module py3plex.dsl) export_target (py3plex.dsl.CompareStmt attribute), [1] (py3plex.dsl.DynamicsStmt attribute), [1] (py3plex.dsl.NullModelStmt attribute), [1] (py3plex.dsl.PathStmt attribute), [1] (py3plex.dsl.TrajectoriesStmt attribute), [1] ExportSpec (class in py3plex.dsl) ExportTarget (class in py3plex.dsl) expr (py3plex.dsl.LayerSet attribute) extend() (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] extend_replace_worst() (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] extend_with_similarity() (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] ExtendedQuery (class in py3plex.dsl) ExternalToolError, [1]

F

fast() (py3plex.dsl.UQ static method) FDR_Q (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] FieldExpression (class in py3plex.dsl) FieldProxy (class in py3plex.dsl) file_export (py3plex.dsl.SelectStmt attribute), [1] fill_tmp_with_edges() (py3plex.core.multinet.multi_layer_network method), [1] filter() (py3plex.dsl.PatternQueryResult method) float() (py3plex.dsl.Param static method) flow() (py3plex.dsl.P static method) flow_betweenness_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] fmt (py3plex.dsl.ExportSpec attribute), [1] ForceAtlas2 (class in py3plex.visualization.fa2.forceatlas2), [1] forceatlas2() (py3plex.visualization.fa2.forceatlas2.ForceAtlas2 method), [1]

forceatlas2_igraph_layout() (py3plex.visualization.fa2.forceatlas2.ForceAtlas2 method), [1] forceatlas2_networkx_layout() (py3plex.visualization.fa2.forceatlas2.ForceAtlas2 method), [1] FORMAT (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] format_message() (py3plex.dsl.DslError method) (py3plex.exceptions.Py3plexException method), [1] format_result() (in module py3plex.dsl) from_edges() (py3plex.core.multinet.multi_layer_network class method), [1] from_homogeneous_hypergraph() (py3plex.core.multinet.multi_layer_network method), [1] from_layers() (py3plex.dsl.QueryBuilder method) from_networkx() (py3plex.core.multinet.multi_layer_network class method), [1] func (py3plex.dsl.DSLOperator attribute), [1] function (py3plex.dsl.ConditionAtom attribute), [1] FunctionCall (class in py3plex.dsl)

G

gdegrees (py3plex.algorithms.community_detection.community_louvain.Status attribute), [1] general_random_walk() (in module py3plex.algorithms.general.walkers), [1] generate_coupled_er_multilayer() (in module py3plex.algorithms.community_detection.multilayer_benchmark), [1] generate_dendrogram() (in module py3plex.algorithms.community_detection.community_louvain), [1] generate_multilayer_lfr() (in module py3plex.algorithms.community_detection.multilayer_benchmark), [1] generate_random_multiedges() (in module py3plex.visualization.multilayer), [1] generate_random_networks() (in module py3plex.visualization.multilayer), [1] generate_rules_report() (in module py3plex.algorithms.hedwig), [1] generate_sbm_multilayer() (in module py3plex.algorithms.community_detection.multilayer_benchmark), [1] generate_walks() (in module py3plex.algorithms.general.walkers), [1] generic_grouping() (in module py3plex.visualization.benchmark_visualizations), [1] get() (PluginRegistry method) (py3plex.dsl.Q.uncertainty class method) get_aggregation_method() (in module py3plex.core.HINMINE.decomposition), [1] get_all() (py3plex.dsl.Q.uncertainty class method) get_attribute_type() (py3plex.dsl.NetworkSchemaProvider method) (py3plex.dsl.SchemaProvider method) (py3plex.dsl.TypeEnvironment method) get_background_knowledge_dir() (in module py3plex.utils), [1] get_background_knowledge_path() (in module py3plex.utils), [1] get_biggest_community() (in module py3plex.dsl) get_calculation_method() (in module py3plex.core.HINMINE.decomposition), [1] get_color_palette() (in module py3plex.config), [1] get_community_partition() (in module py3plex.dsl) get_community_size_distribution() (in module py3plex.dsl) get_community_sizes() (in module py3plex.dsl) get_computed_type() (py3plex.dsl.TypeEnvironment method) get_data_path() (in module py3plex.utils), [1] get_dataset_path() (in module py3plex.utils), [1] get_decomposition() (py3plex.core.multinet.multi_layer_network method), [1] get_decomposition_cycles() (py3plex.core.multinet.multi_layer_network method), [1] get_degrees() (py3plex.core.multinet.multi_layer_network method), [1] get_domains() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] get_edge_count() (py3plex.dsl.NetworkSchemaProvider method) (py3plex.dsl.SchemaProvider method) get_edges() (py3plex.core.multinet.multi_layer_network method), [1] get_empty_domain() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] get_example_image_path() (in module py3plex.utils), [1] get_examples() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] get_full_domain() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] get_label_matrix() (py3plex.core.multinet.multi_layer_network method), [1]

get_layer_names() (py3plex.dsl.LayerExpr method) get_layers() (py3plex.core.multinet.multi_layer_network method), [1] get_logger() (in module py3plex.logging_config), [1] get_members() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] get_monitor() (in module py3plex.profiling), [1] get_multilayer_dataset_path() (in module py3plex.utils), [1] get_neighbors() (py3plex.core.multinet.multi_layer_network method), [1] get_node_attribute() (py3plex.core.multinet.multi_layer_network method), [1] get_node_count() (py3plex.dsl.NetworkSchemaProvider method) (py3plex.dsl.SchemaProvider method) get_nodes() (py3plex.core.multinet.multi_layer_network method), [1] get_num_communities() (in module py3plex.dsl) get_nx_object() (py3plex.core.multinet.multi_layer_network method), [1] get_operator() (in module py3plex.dsl) get_partition() (py3plex.core.multinet.multi_layer_network method), [1] get_plugin_info() (PluginRegistry method) get_report() (py3plex.profiling.PerformanceMonitor method), [1] get_return_vars() (py3plex.dsl.PatternGraph method) get_reverse_members() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] get_rng() (in module py3plex.utils), [1] get_root() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] get_score() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] get_smallest_community() (in module py3plex.dsl) get_subclasses() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] (py3plex.algorithms.hedwig.learners.bottomup.BottomUpLearner method), [1] (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] get_superclasses() (py3plex.algorithms.hedwig.learners.bottomup.BottomUpLearner method), [1] (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] get_supra_adjacency_matrix() (py3plex.core.multinet.multi_layer_network method), [1] get_tensor() (py3plex.core.multinet.multi_layer_network method), [1] get_top_ranked() (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank method), [1] get_uncertainty_config() (in module py3plex.uncertainty) (in module py3plex.uncertainty.context) get_unique_entity_counts() (py3plex.core.multinet.multi_layer_network method), [1] gr_value() (in module py3plex.core.HINMINE.decomposition), [1] graph (py3plex.dsl.DSLExecutionContext attribute), [1] group_by (py3plex.dsl.SelectStmt attribute), [1] group_by() (py3plex.dsl.QueryBuilder method) group_score() (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] group_summary() (py3plex.dsl.QueryResult method) GroupingError

H

hairball_plot() (in module py3plex.visualization.multilayer), [1] harmonic_closeness_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] has_community() (py3plex.dsl.QueryBuilder method) has_layer() (py3plex.dsl.TypeEnvironment method) heaviside() (in module py3plex.algorithms.statistics.bayesiantests), [1] HeterogeneousInformationNetwork (class in py3plex.core.HINMINE.dataStructures), [1] hex_to_RGB() (in module py3plex.visualization.colors), [1] hierarchical() (in module py3plex.algorithms.statistics.bayesiantests), [1]

hierarchical_MC() (in module py3plex.algorithms.statistics.bayesiantests), [1] hinmine_decompose() (in module py3plex.core.HINMINE.decomposition), [1] hinmine_get_cycles() (in module py3plex.core.HINMINE.decomposition), [1] hits_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] hub_matrix() (in module py3plex.algorithms.node_ranking), [1] (in module py3plex.algorithms.node_ranking.node_ranking), [1] hubs_and_authorities() (in module py3plex.algorithms.node_ranking), [1] (in module py3plex.algorithms.node_ranking.node_ranking), [1]

I

i (py3plex.algorithms.hedwig.core.predicate.Predicate attribute), [1] identify_n_hubs() (in module py3plex.algorithms.statistics.basic_statistics), [1] ig_value() (in module py3plex.core.HINMINE.decomposition), [1] Improvement (py3plex.algorithms.hedwig.learners.bottomup.BottomUpLearner attribute), [1] (py3plex.algorithms.hedwig.learners.learner.Learner attribute), [1] in_layers() (py3plex.dsl.PatternNodeBuilder method) IncompatibleNetworkError, [1] index (py3plex.uncertainty.StatMatrix attribute) (py3plex.uncertainty.StatSeries attribute) (py3plex.uncertainty.types.StatMatrix attribute) (py3plex.uncertainty.types.StatSeries attribute) indices_to_bits() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] induce() (py3plex.algorithms.hedwig.learners.bottomup.BottomUpLearner method), [1] (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] (py3plex.algorithms.hedwig.learners.optimal.OptimalLearner method), [1] induced_graph() (in module py3plex.algorithms.community_detection.community_louvain), [1] infomap_communities() (in module py3plex.algorithms.community_detection.community_wrapper), [1] information_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] init() (py3plex.algorithms.community_detection.community_louvain.Status method), [1] (py3plex.visualization.fa2.forceatlas2.ForceAtlas2 method), [1] int() (py3plex.dsl.Param static method) inter_layer_assortativity() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] inter_layer_coupling_strength() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] inter_layer_degree_correlation() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] inter_layer_dependence_entropy() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] interactive_diagonal_plot() (in module py3plex.visualization.multilayer), [1]

interactive_hairball_plot() (in module py3plex.visualization.multilayer), [1] interdependence() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] interesting() (in module py3plex.algorithms.hedwig.stats.scorefunctions), [1] interlayer_degree_correlation_matrix() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] internals (py3plex.algorithms.community_detection.community_louvain.Status attribute), [1] InvalidEdgeError, [1] InvalidLayerError, [1] InvalidNodeError, [1] invariant() (in module py3plex.core.multinet), [1] invert() (py3plex.core.multinet.multi_layer_network method), [1] is_comparable() (py3plex.dsl.AttrType method) is_comparison (py3plex.dsl.ConditionAtom property) is_deterministic (py3plex.uncertainty.CommunityStats property) (py3plex.uncertainty.StatMatrix property) (py3plex.uncertainty.StatSeries property) (py3plex.uncertainty.types.CommunityStats property) (py3plex.uncertainty.types.StatMatrix property) (py3plex.uncertainty.types.StatSeries property) is_discrete_target() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] is_empty (py3plex.core.multinet.multi_layer_network property), [1] is_function (py3plex.dsl.ConditionAtom property) is_implicit_root() (py3plex.algorithms.hedwig.learners.bottomup.BottomUpLearner method), [1] (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] is_special (py3plex.dsl.ConditionAtom property) is_string_like() (in module py3plex.core.nx_compat), [1] items (py3plex.dsl.QueryResult attribute)

J

JACKKNIFE (py3plex.uncertainty.ResamplingStrategy attribute), [1] (py3plex.uncertainty.types.ResamplingStrategy attribute), [1]

join_order (py3plex.dsl.PatternPlan attribute), [1]

K

kaplan_meier_AUC() (in module py3plex.algorithms.hedwig.stats.scorefunctions), [1] katz_bonacich_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] katz_centrality() (in module py3plex.algorithms.multilayer_algorithms.centrality), [1] (in module py3plex.algorithms.multilayer_algorithms.supra_matrix_function_centrality), [1], [2] key (py3plex.dsl.OrderItem attribute), [1] kind (py3plex.dsl.EdgeLayerConstraint attribute), [1] (py3plex.dsl.ExtendedQuery attribute), [1] (py3plex.dsl.LayerConstraint attribute), [1] (py3plex.dsl.SpecialPredicate attribute), [1] (py3plex.dsl.TemporalContext attribute), [1]

known_attributes (py3plex.dsl.UnknownAttributeError attribute) known_layers (py3plex.dsl.UnknownLayerError attribute) known_measures (py3plex.dsl.UnknownMeasureError attribute) kwargs (py3plex.dsl.UQConfig attribute), [1]

L

label() (py3plex.dsl.PatternNodeBuilder method) label_propagation() (in module py3plex.algorithms.network_classification), [1] label_propagation_normalization() (in module py3plex.algorithms.network_classification), [1] label_propagation_tf() (in module py3plex.algorithms.network_classification), [1] labels (py3plex.dsl.PatternNode attribute), [1] (py3plex.uncertainty.CommunityStats attribute) (py3plex.uncertainty.types.CommunityStats attribute) layer (py3plex.dsl.EdgeLayerConstraint attribute), [1] (py3plex.dsl.UnknownLayerError attribute) layer_connectivity_entropy() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] layer_constraint (py3plex.dsl.PatternEdge attribute), [1] (py3plex.dsl.PatternNode attribute), [1] layer_count (py3plex.core.multinet.multi_layer_network property), [1] layer_degree_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] layer_density() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] layer_expr (py3plex.dsl.CompareStmt attribute), [1] (py3plex.dsl.DynamicsStmt attribute), [1] (py3plex.dsl.NullModelStmt attribute), [1] (py3plex.dsl.PathStmt attribute), [1] (py3plex.dsl.SelectStmt attribute), [1] layer_influence_centrality() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] layer_names (py3plex.core.random_generators.SBMMetadata attribute), [1], [2], [3] layer_params (py3plex.dsl.DynamicsStmt attribute), [1] layer_redundancy_coefficient() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] LAYER_REF (py3plex.dsl.AttrType attribute) layer_set (py3plex.dsl.SelectStmt attribute) layer_shuffle() (py3plex.dsl.N static method) layer_similarity() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] layer_specific_random_walk() (in module py3plex.algorithms.general.walkers), [1] LayerConstraint (class in py3plex.dsl) LayerExpr (class in py3plex.dsl) LayerExprBuilder (class in py3plex.dsl) LayerProxy (class in py3plex.dsl) layers (py3plex.core.multinet.multi_layer_network property), [1] LayerSet (class in py3plex.dsl) LayerSetExpr (in module py3plex.dsl) LayerTerm (class in py3plex.dsl) learn_embedding() (in module py3plex.wrappers.train_node2vec_embedding), [1] Learner (class in py3plex.algorithms.hedwig.learners.learner), [1] LEARNER (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] LEAVES (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] left (py3plex.dsl.Comparison attribute), [1]

leverage() (in module py3plex.algorithms.hedwig.stats.scorefunctions), [1] lift() (in module py3plex.algorithms.hedwig.stats.scorefunctions), [1] limit (py3plex.dsl.PathStmt attribute), [1] (py3plex.dsl.SelectStmt attribute), [1] (py3plex.dsl.TrajectoriesStmt attribute), [1] limit() (py3plex.dsl.PathBuilder method) (py3plex.dsl.PatternQueryBuilder method) (py3plex.dsl.PatternQueryResult method) (py3plex.dsl.QueryBuilder method) (py3plex.dsl.TrajectoriesBuilder method) limit_per_group (py3plex.dsl.SelectStmt attribute), [1] linAttraction() (in module py3plex.visualization.fa2.fa2util), [1] linear_gradient() (in module py3plex.visualization.colors), [1] linGravity() (in module py3plex.visualization.fa2.fa2util), [1] linRepulsion() (in module py3plex.visualization.fa2.fa2util), [1] linRepulsion_region() (in module py3plex.visualization.fa2.fa2util), [1] lint() (in module py3plex.dsl) list_edge_types() (py3plex.dsl.NetworkSchemaProvider method) (py3plex.dsl.SchemaProvider method) list_groups() (py3plex.dsl.LayerProxy static method) (py3plex.dsl.LayerSet static method) list_layers() (py3plex.dsl.NetworkSchemaProvider method) (py3plex.dsl.SchemaProvider method) list_node_types() (py3plex.dsl.NetworkSchemaProvider method) (py3plex.dsl.SchemaProvider method) list_operators() (in module py3plex.dsl) list_plugins() (PluginRegistry method) load_binary() (in module py3plex.algorithms.community_detection.community_louvain), [1] load_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] load_edge_activity_file() (in module py3plex.core.parsers), [1] load_edge_activity_raw() (in module py3plex.core.parsers), [1] load_embedding() (py3plex.core.multinet.multi_layer_network method), [1] load_hinmine_object() (in module py3plex.core.HINMINE.IO), [1] load_layer_name_mapping() (py3plex.core.multinet.multi_layer_network method), [1] load_network() (py3plex.core.multinet.multi_layer_network method), [1] load_network_activity() (py3plex.core.multinet.multi_layer_network method), [1] load_temporal_edge_information() (in module py3plex.core.parsers), [1] (py3plex.core.multinet.multi_layer_network method), [1] local_efficiency_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] louvain_communities() (in module py3plex.algorithms.community_detection.community_wrapper), [1] louvain_multilayer() (in module py3plex.algorithms.community_detection.multilayer_modularity), [1] lp_aggregated_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1]

M

main() (in module py3plex.cli), [1] (in module py3plex.wrappers.benchmark_nodes), [1] match_pattern() (in module py3plex.dsl) matches (py3plex.dsl.PatternQueryResult attribute) matches() (py3plex.dsl.EdgeLayerConstraint method) (py3plex.dsl.LayerConstraint method) MatchRow (class in py3plex.dsl) max_iter (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank attribute), [1] mean (py3plex.uncertainty.StatMatrix attribute) (py3plex.uncertainty.StatSeries attribute) (py3plex.uncertainty.types.StatMatrix attribute) (py3plex.uncertainty.types.StatSeries attribute) measure (py3plex.dsl.UnknownMeasureError attribute) measure() (py3plex.dsl.CompareBuilder method) (py3plex.dsl.TrajectoriesBuilder method) measures (py3plex.dsl.CompareStmt attribute), [1] (py3plex.dsl.TrajectoriesStmt attribute), [1] merge_with() (py3plex.core.multinet.multi_layer_network method), [1] message (py3plex.dsl.Diagnostic attribute), [1] meta (py3plex.dsl.PatternQueryResult attribute) (py3plex.dsl.QueryResult attribute) (py3plex.uncertainty.CommunityStats attribute) (py3plex.uncertainty.StatMatrix attribute) (py3plex.uncertainty.StatSeries attribute) (py3plex.uncertainty.types.CommunityStats attribute) (py3plex.uncertainty.types.StatMatrix attribute) (py3plex.uncertainty.types.StatSeries attribute) method (py3plex.dsl.ComputeItem attribute), [1] (py3plex.dsl.UQConfig attribute), [1] metric (py3plex.dsl.DslMissingMetricError attribute) metric_name (py3plex.dsl.CompareStmt attribute), [1] midpoint_generator() (py3plex.core.HINMINE.dataStructures.HeterogeneousInformationNetwork method), [1] MODE (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] mode (py3plex.uncertainty.types.UncertaintyConfig attribute), [1] (py3plex.uncertainty.UncertaintyConfig attribute), [1] model() (py3plex.dsl.N static method) model_type (py3plex.dsl.NullModelStmt attribute), [1] modularity (py3plex.uncertainty.CommunityStats attribute) (py3plex.uncertainty.types.CommunityStats attribute) modularity() (in module py3plex.algorithms.community_detection.community_louvain), [1] (in module py3plex.algorithms.community_detection.community_measures), [1] (in module py3plex.algorithms.node_ranking.node_ranking), [1] modularity_std (py3plex.uncertainty.CommunityStats attribute) (py3plex.uncertainty.types.CommunityStats attribute) module py3plex.algorithms.centrality_toolkit py3plex.algorithms.community_detection.community_louvain, [1] py3plex.algorithms.community_detection.community_measures, [1] py3plex.algorithms.community_detection.community_ranking, [1] py3plex.algorithms.community_detection.community_wrapper, [1] py3plex.algorithms.community_detection.multilayer_benchmark, [1] py3plex.algorithms.community_detection.multilayer_modularity, [1] py3plex.algorithms.community_detection.NoRC, [1] py3plex.algorithms.general.benchmark_classification, [1] py3plex.algorithms.general.walkers, [1] py3plex.algorithms.hedwig, [1] py3plex.algorithms.hedwig.core.converters, [1] py3plex.algorithms.hedwig.core.example, [1] py3plex.algorithms.hedwig.core.kb, [1] py3plex.algorithms.hedwig.core.predicate, [1] py3plex.algorithms.hedwig.core.rule, [1] py3plex.algorithms.hedwig.core.settings, [1] py3plex.algorithms.hedwig.learners.bottomup, [1] py3plex.algorithms.hedwig.learners.learner, [1] py3plex.algorithms.hedwig.learners.optimal, [1] py3plex.algorithms.hedwig.stats.scorefunctions, [1] py3plex.algorithms.hedwig.stats.validate, [1] py3plex.algorithms.multicentrality, [1] py3plex.algorithms.multilayer_algorithms.centrality, [1] py3plex.algorithms.multilayer_algorithms.entanglement, [1] py3plex.algorithms.multilayer_algorithms.multixrank, [1] py3plex.algorithms.multilayer_algorithms.supra_matrix_function_centrality, [1] py3plex.algorithms.network_classification, [1] py3plex.algorithms.node_ranking, [1] py3plex.algorithms.node_ranking.node_ranking, [1] py3plex.algorithms.statistics.basic_statistics, [1] py3plex.algorithms.statistics.bayesiantests, [1] py3plex.algorithms.statistics.correlation_networks, [1] py3plex.algorithms.statistics.multilayer_statistics, [1] py3plex.algorithms.statistics.topology, [1] py3plex.cli, [1] py3plex.config, [1] py3plex.core.converters, [1] py3plex.core.HINMINE.dataStructures, [1] py3plex.core.HINMINE.decomposition, [1] py3plex.core.HINMINE.IO, [1] py3plex.core.multinet, [1] py3plex.core.nx_compat, [1] py3plex.core.parsers, [1] py3plex.core.random_generators, [1] py3plex.core.supporting, [1] py3plex.dsl py3plex.exceptions, [1] py3plex.io.api, [1] py3plex.logging_config, [1] py3plex.multinet.aggregation, [1] py3plex.profiling, [1] py3plex.uncertainty py3plex.uncertainty.context py3plex.uncertainty.estimation py3plex.uncertainty.types py3plex.utils, [1] py3plex.validation, [1] py3plex.visualization.benchmark_visualizations, [1] py3plex.visualization.bezier, [1] py3plex.visualization.colors, [1] py3plex.visualization.drawing_machinery, [1] py3plex.visualization.embedding_visualization.embedding_visualization, [1] py3plex.visualization.fa2.fa2util, [1] py3plex.visualization.fa2.forceatlas2, [1] py3plex.visualization.layout_algorithms, [1] py3plex.visualization.multilayer, [1] py3plex.visualization.sankey, [1] py3plex.wrappers.benchmark_nodes, [1] py3plex.wrappers.train_node2vec_embedding, [1]

monitor() (py3plex.core.multinet.multi_layer_network method), [1] monoplex_nx_wrapper() (py3plex.core.multinet.multi_layer_network method), [1] multi_layer_network (class in py3plex.core.multinet), [1] multilayer_betweenness_centrality() (in module py3plex.algorithms.centrality_toolkit) (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] multilayer_betweenness_surface() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] multilayer_closeness_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] multilayer_clustering_coefficient() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] multilayer_eigenvector_centrality() (in module py3plex.algorithms.centrality_toolkit) multilayer_modularity() (in module py3plex.algorithms.community_detection.multilayer_modularity), [1] (in module py3plex.algorithms.statistics.multilayer_statistics), [1] multilayer_motif_frequency() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] multilayer_pagerank() (in module py3plex.algorithms.centrality_toolkit) MultilayerCentrality (class in py3plex.algorithms.multilayer_algorithms.centrality), [1] multiplex_betweenness_centrality() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] multiplex_closeness_centrality() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] multiplex_coreness() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] multiplex_degree_centrality() (in module py3plex.algorithms.centrality_toolkit) multiplex_eigenvector_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] multiplex_eigenvector_versatility() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] multiplex_k_core() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] multiplex_participation_coefficient() (in module py3plex.algorithms.multicentrality), [1] multiplex_rich_club_coefficient() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] multiplexes (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank attribute), [1] MultiXRank (class in py3plex.algorithms.multilayer_algorithms.multixrank), [1] multixrank_from_py3plex_networks() (in module py3plex.algorithms.multilayer_algorithms.multixrank), [1]

N

N (class in py3plex.dsl) n2v_embedding() (in module py3plex.wrappers.train_node2vec_embedding), [1] n_communities (py3plex.uncertainty.CommunityStats attribute) (py3plex.uncertainty.types.CommunityStats attribute) n_examples() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] n_members() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] n_null (py3plex.dsl.ComputeItem attribute), [1] n_samples (py3plex.dsl.ComputeItem attribute), [1] (py3plex.dsl.UQConfig attribute), [1] name (py3plex.dsl.ComputeItem attribute), [1] (py3plex.dsl.DSLOperator attribute), [1] (py3plex.dsl.FunctionCall attribute), [1] (py3plex.dsl.LayerTerm attribute), [1] (py3plex.dsl.ParamRef attribute), [1] NEGATIONS (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] network_a (py3plex.dsl.CompareStmt attribute), [1] network_b (py3plex.dsl.CompareStmt attribute), [1] NetworkConstructionError, [1] NetworkSchemaProvider (class in py3plex.dsl) NETWORKX (py3plex.dsl.ExportTarget attribute) NO_CACHE (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] Node (class in py3plex.visualization.fa2.fa2util), [1] node() (py3plex.dsl.PatternQueryBuilder method) node2com (py3plex.algorithms.community_detection.community_louvain.Status attribute), [1] node2vec_walk() (in module py3plex.algorithms.general.walkers), [1] node_activity() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] node_count (py3plex.core.multinet.multi_layer_network property), [1] node_ids (py3plex.core.random_generators.SBMMetadata attribute), [1], [2], [3]

node_order (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank attribute), [1] NODE_REF (py3plex.dsl.AttrType attribute) node_type() (py3plex.dsl.QueryBuilder method) nodes (py3plex.dsl.PatternGraph attribute), [1] (py3plex.dsl.QueryResult property) NODES (py3plex.dsl.Target attribute) nodes() (py3plex.dsl.Q static method) non_redundant() (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] NoRC_communities() (in module py3plex.algorithms.community_detection.community_wrapper), [1] NoRC_communities_main() (in module py3plex.algorithms.community_detection.NoRC), [1] normalize_amplify_freq() (in module py3plex.algorithms.network_classification), [1] normalize_exp() (in module py3plex.algorithms.network_classification), [1] normalize_initial_matrix_freq() (in module py3plex.algorithms.network_classification), [1] notes (py3plex.exceptions.Py3plexException attribute), [1] np_calculate_importance_chi() (in module py3plex.core.HINMINE.decomposition), [1] np_calculate_importance_tf() (in module py3plex.core.HINMINE.decomposition), [1] null_model (py3plex.dsl.ComputeItem attribute), [1] null_model_metric() (in module py3plex.uncertainty) nullmodel (py3plex.dsl.ExtendedQuery attribute), [1] NullModelBuilder (class in py3plex.dsl) NullModelStmt (class in py3plex.dsl) num_samples (py3plex.dsl.NullModelStmt attribute), [1] number_of_communities() (in module py3plex.algorithms.community_detection.community_measures), [1] NUMERIC (py3plex.dsl.AttrType attribute) nx_from_scipy_sparse_matrix() (in module py3plex.core.nx_compat), [1] nx_info() (in module py3plex.core.nx_compat), [1] nx_read_gpickle() (in module py3plex.core.nx_compat), [1] nx_to_scipy_sparse_matrix() (in module py3plex.core.nx_compat), [1] nx_write_gpickle() (in module py3plex.core.nx_compat), [1]

O

obo2n3() (in module py3plex.algorithms.hedwig.core.converters), [1] OFF (py3plex.uncertainty.types.UncertaintyMode attribute), [1] (py3plex.uncertainty.UncertaintyMode attribute), [1] ON (py3plex.uncertainty.types.UncertaintyMode attribute), [1] (py3plex.uncertainty.UncertaintyMode attribute), [1] on_layers() (py3plex.dsl.CompareBuilder method) (py3plex.dsl.DynamicsBuilder method) (py3plex.dsl.NullModelBuilder method) (py3plex.dsl.PathBuilder method) onclick() (in module py3plex.visualization.multilayer), [1] one() (py3plex.dsl.LayerConstraint static method) op (py3plex.dsl.Comparison attribute), [1] (py3plex.dsl.Predicate attribute), [1]

ops (py3plex.dsl.ConditionExpr attribute), [1] (py3plex.dsl.LayerExpr attribute), [1] OPTIMAL_SUBCLASS (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] OptimalLearner (class in py3plex.algorithms.hedwig.learners.optimal), [1] options (py3plex.dsl.ExportSpec attribute), [1] order_by (py3plex.dsl.SelectStmt attribute), [1] (py3plex.dsl.TrajectoriesStmt attribute), [1] order_by() (py3plex.dsl.PatternQueryBuilder method) (py3plex.dsl.QueryBuilder method) (py3plex.dsl.TrajectoriesBuilder method) OrderItem (class in py3plex.dsl) OUTPUT (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] overlapping_degree_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1]

P

P (class in py3plex.dsl) page_rank_kernel() (in module py3plex.algorithms.community_detection.community_ranking), [1] (in module py3plex.algorithms.community_detection.NoRC), [1] (in module py3plex.algorithms.node_ranking), [1] (in module py3plex.algorithms.node_ranking.node_ranking), [1] pagerank_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] PANDAS (py3plex.dsl.ExportTarget attribute) paper() (py3plex.dsl.UQ static method) Param (class in py3plex.dsl) parameter (py3plex.dsl.ParameterMissingError attribute) ParameterMissingError parameters_per_layer() (py3plex.dsl.DynamicsBuilder method) ParamRef (class in py3plex.dsl) params (py3plex.dsl.DSLExecutionContext attribute), [1] (py3plex.dsl.DynamicsStmt attribute), [1] (py3plex.dsl.NullModelStmt attribute), [1] (py3plex.dsl.PathStmt attribute), [1] (py3plex.dsl.SpecialPredicate attribute), [1] parse() (py3plex.dsl.LayerSet static method) parse_detangler_json() (in module py3plex.core.parsers), [1] parse_edgelist_multi_types() (in module py3plex.core.parsers), [1] parse_embedding() (in module py3plex.core.parsers), [1] parse_gaf_to_uniprot_GO() (in module py3plex.core.supporting), [1] parse_gml() (in module py3plex.core.parsers), [1] parse_gpickle() (in module py3plex.core.parsers), [1] parse_gpickle_biomine() (in module py3plex.core.parsers), [1] parse_infomap() (in module py3plex.algorithms.community_detection.community_wrapper), [1] parse_matrix() (in module py3plex.core.parsers), [1] parse_matrix_to_nx() (in module py3plex.core.parsers), [1] parse_multi_edgelist() (in module py3plex.core.parsers), [1] parse_multiedge_tuple_list() (in module py3plex.core.parsers), [1] parse_multiplex_edges() (in module py3plex.core.parsers), [1] parse_multiplex_folder() (in module py3plex.core.parsers), [1] parse_network() (in module py3plex.core.parsers), [1] parse_nx() (in module py3plex.core.parsers), [1] parse_simple_edgelist() (in module py3plex.core.parsers), [1] parse_spin_edgelist() (in module py3plex.core.parsers), [1] ParsingError, [1] participation_coefficient() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] partition_at_level() (in module py3plex.algorithms.community_detection.community_louvain), [1] path (py3plex.dsl.ExportSpec attribute), [1] (py3plex.dsl.ExtendedQuery attribute), [1] path() (py3plex.dsl.PatternQueryBuilder method) path_type (py3plex.dsl.PathStmt attribute), [1] PathBuilder (class in py3plex.dsl) PathStmt (class in py3plex.dsl) pattern (py3plex.dsl.PatternPlan attribute), [1] (py3plex.dsl.PatternQueryResult attribute) pattern() (py3plex.dsl.Q static method) PatternEdge (class in py3plex.dsl) PatternEdgeBuilder (class in py3plex.dsl) PatternGraph (class in py3plex.dsl) PatternNode (class in py3plex.dsl) PatternNodeBuilder (class in py3plex.dsl) PatternPlan (class in py3plex.dsl) PatternQueryBuilder (class in py3plex.dsl) PatternQueryResult (class in py3plex.dsl) per_community() (py3plex.dsl.QueryBuilder method) per_layer() (py3plex.dsl.QueryBuilder method) per_layer_pair() (py3plex.dsl.QueryBuilder method) percolation_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] percolation_threshold() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] PerformanceMonitor (class in py3plex.profiling), [1] PERTURBATION (py3plex.uncertainty.ResamplingStrategy attribute), [1] (py3plex.uncertainty.types.ResamplingStrategy attribute), [1] pick_threshold() (in module py3plex.algorithms.statistics.correlation_networks), [1] plan_steps (py3plex.dsl.ExplainResult attribute), [1] PlanStep (class in py3plex.dsl) plot_core_macro() (in module py3plex.visualization.benchmark_visualizations), [1] plot_core_macro_box() (in module py3plex.visualization.benchmark_visualizations), [1] plot_core_macro_gg() (in module py3plex.visualization.benchmark_visualizations), [1] plot_core_micro() (in module py3plex.visualization.benchmark_visualizations), [1] plot_core_micro_gg() (in module py3plex.visualization.benchmark_visualizations), [1] plot_core_micro_grid() (in module py3plex.visualization.benchmark_visualizations), [1] plot_core_time() (in module py3plex.visualization.benchmark_visualizations), [1] plot_core_time_gg() (in module py3plex.visualization.benchmark_visualizations), [1] plot_core_variability() (in module py3plex.visualization.benchmark_visualizations), [1] plot_critical_distance() (in module py3plex.visualization.benchmark_visualizations), [1] plot_edge_colored_projection() (in module py3plex.visualization.multilayer), [1] plot_ego_multilayer() (in module py3plex.visualization.multilayer), [1] plot_mean_times() (in module py3plex.visualization.benchmark_visualizations), [1] plot_posterior() (in module py3plex.algorithms.statistics.bayesiantests), [1] plot_power_law() (in module py3plex.algorithms.statistics.topology), [1] plot_radial_layers() (in module py3plex.visualization.multilayer), [1] plot_robustness() (in module py3plex.visualization.benchmark_visualizations), [1] plot_simplex() (in module py3plex.algorithms.statistics.bayesiantests), [1] plot_small_multiples() (in module py3plex.visualization.multilayer), [1] plot_supra_adjacency_heatmap() (in module py3plex.visualization.multilayer), [1] PluginRegistry (built-in class) positives (py3plex.algorithms.hedwig.core.rule.Rule property), [1] post_filters (py3plex.dsl.SelectStmt attribute), [1] precision() (in module py3plex.algorithms.hedwig.stats.scorefunctions), [1] (py3plex.algorithms.hedwig.core.rule.Rule method), [1] Predicate (class in py3plex.algorithms.hedwig.core.predicate), [1] (class in py3plex.dsl) predicates (py3plex.dsl.PatternEdge attribute), [1] (py3plex.dsl.PatternNode attribute), [1] predict() (py3plex.wrappers.benchmark_nodes.TopKRanker method), [1] prepare_for_parsing() (in module py3plex.core.converters), [1] prepare_for_visualization() (in module py3plex.core.converters), [1] prepare_for_visualization_hairball() (in module py3plex.core.converters), [1] process_name (py3plex.dsl.DynamicsStmt attribute), [1] process_network() (py3plex.core.HINMINE.dataStructures.HeterogeneousInformationNetwork method), [1] process_ref (py3plex.dsl.TrajectoriesStmt attribute), [1] profile_performance() (in module py3plex.profiling), [1] provided_params (py3plex.dsl.ParameterMissingError attribute) py3plex.algorithms.centrality_toolkit module py3plex.algorithms.community_detection.community_louvain module, [1] py3plex.algorithms.community_detection.community_measures module, [1] py3plex.algorithms.community_detection.community_ranking module, [1] py3plex.algorithms.community_detection.community_wrapper module, [1] py3plex.algorithms.community_detection.multilayer_benchmark module, [1] py3plex.algorithms.community_detection.multilayer_modularity module, [1] py3plex.algorithms.community_detection.NoRC module, [1] py3plex.algorithms.general.benchmark_classification module, [1] py3plex.algorithms.general.walkers module, [1]

py3plex.algorithms.hedwig module, [1] py3plex.algorithms.hedwig.core.converters module, [1] py3plex.algorithms.hedwig.core.example module, [1] py3plex.algorithms.hedwig.core.kb module, [1] py3plex.algorithms.hedwig.core.predicate module, [1] py3plex.algorithms.hedwig.core.rule module, [1] py3plex.algorithms.hedwig.core.settings module, [1] py3plex.algorithms.hedwig.learners.bottomup module, [1] py3plex.algorithms.hedwig.learners.learner module, [1] py3plex.algorithms.hedwig.learners.optimal module, [1] py3plex.algorithms.hedwig.stats.scorefunctions module, [1] py3plex.algorithms.hedwig.stats.validate module, [1] py3plex.algorithms.multicentrality module, [1] py3plex.algorithms.multilayer_algorithms.centrality module, [1] py3plex.algorithms.multilayer_algorithms.entanglement module, [1] py3plex.algorithms.multilayer_algorithms.multixrank module, [1] py3plex.algorithms.multilayer_algorithms.supra_matrix_function_centrality module, [1] py3plex.algorithms.network_classification module, [1] py3plex.algorithms.node_ranking module, [1] py3plex.algorithms.node_ranking.node_ranking module, [1] py3plex.algorithms.statistics.basic_statistics module, [1] py3plex.algorithms.statistics.bayesiantests module, [1] py3plex.algorithms.statistics.correlation_networks module, [1] py3plex.algorithms.statistics.multilayer_statistics module, [1] py3plex.algorithms.statistics.topology module, [1] py3plex.cli module, [1] py3plex.config module, [1] py3plex.core.converters module, [1] py3plex.core.HINMINE.dataStructures module, [1] py3plex.core.HINMINE.decomposition module, [1] py3plex.core.HINMINE.IO module, [1] py3plex.core.multinet module, [1] py3plex.core.nx_compat module, [1] py3plex.core.parsers module, [1] py3plex.core.random_generators module, [1] py3plex.core.supporting module, [1] py3plex.dsl module py3plex.exceptions module, [1] py3plex.io.api module, [1] py3plex.logging_config module, [1] py3plex.multinet.aggregation module, [1] py3plex.profiling module, [1] py3plex.uncertainty module py3plex.uncertainty.context module py3plex.uncertainty.estimation module py3plex.uncertainty.types module py3plex.utils module, [1] py3plex.validation module, [1] py3plex.visualization.benchmark_visualizations module, [1] py3plex.visualization.bezier module, [1] py3plex.visualization.colors module, [1] py3plex.visualization.drawing_machinery module, [1] py3plex.visualization.embedding_visualization.embedding_visualization module, [1] py3plex.visualization.fa2.fa2util module, [1] py3plex.visualization.fa2.forceatlas2 module, [1] py3plex.visualization.layout_algorithms module, [1] py3plex.visualization.multilayer module, [1] py3plex.visualization.sankey module, [1] py3plex.wrappers.benchmark_nodes module, [1] py3plex.wrappers.train_node2vec_embedding module, [1] Py3plexException, [1] Py3plexFormatError, [1] Py3plexIOError, [1] Py3plexLayoutError, [1] Py3plexMatrixError, [1]

Q

Q (class in py3plex.dsl) Q.uncertainty (class in py3plex.dsl) quantiles (py3plex.uncertainty.StatMatrix attribute) (py3plex.uncertainty.StatSeries attribute) (py3plex.uncertainty.types.StatMatrix attribute) (py3plex.uncertainty.types.StatSeries attribute)

Query (class in py3plex.dsl) QueryBuilder (class in py3plex.dsl) QueryResult (class in py3plex.dsl)

R

random_multilayer_ER() (in module py3plex.core.random_generators), [1] random_multilayer_SBM() (in module py3plex.core.random_generators), [1] random_multiplex_ER() (in module py3plex.core.random_generators), [1] random_multiplex_generator() (in module py3plex.core.random_generators), [1] random_seed() (py3plex.dsl.DynamicsBuilder method) random_state (py3plex.dsl.ComputeItem attribute), [1] random_walk() (py3plex.dsl.P static method) random_walk_with_restart() (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank method), [1] range_name (py3plex.dsl.TemporalContext attribute), [1] rank_by() (py3plex.dsl.QueryBuilder method) rank_specs (py3plex.dsl.SelectStmt attribute), [1] Ranked (py3plex.algorithms.hedwig.core.example.Example attribute), [1] read() (in module py3plex.io.api), [1] read_ground_truth_communities() (py3plex.core.multinet.multi_layer_network method), [1] record() (py3plex.profiling.PerformanceMonitor method), [1] ref() (py3plex.dsl.Param static method) Region (class in py3plex.visualization.fa2.fa2util), [1] register_operator() (in module py3plex.dsl) register_plugin() (PluginRegistry method) register_reader() (in module py3plex.io.api), [1] register_writer() (in module py3plex.io.api), [1] remove_edges() (py3plex.core.multinet.multi_layer_network method), [1] remove_layer_edges() (py3plex.core.multinet.multi_layer_network method), [1] remove_nodes() (py3plex.core.multinet.multi_layer_network method), [1] rename() (py3plex.dsl.QueryBuilder method) rename_map (py3plex.dsl.SelectStmt attribute), [1] replacement (py3plex.dsl.SuggestedFix attribute), [1] replicates (py3plex.dsl.DynamicsStmt attribute), [1] require() (in module py3plex.algorithms.multicentrality), [1] (in module py3plex.algorithms.statistics.basic_statistics), [1] (in module py3plex.core.converters), [1] (in module py3plex.core.multinet), [1] (in module py3plex.core.nx_compat), [1] (in module py3plex.core.parsers), [1] (in module py3plex.core.random_generators), [1] (in module py3plex.core.supporting), [1] (in module py3plex.io.api), [1] (in module py3plex.multinet.aggregation), [1] (in module py3plex.utils), [1] (in module py3plex.visualization.layout_algorithms), [1]

required_by (py3plex.dsl.DslMissingMetricError attribute) ResamplingStrategy (class in py3plex.uncertainty) (class in py3plex.uncertainty.types) reset() (PluginRegistry class method) (py3plex.dsl.Q.uncertainty class method) reset_to_defaults() (in module py3plex.config), [1] resilience() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] resolve() (py3plex.dsl.LayerSet method) restart_prob (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank attribute), [1] result_name (py3plex.dsl.ComputeItem property) return_infomap_communities() (in module py3plex.algorithms.community_detection.community_ranking), [1] return_vars (py3plex.dsl.PatternGraph attribute), [1] returning() (py3plex.dsl.PatternQueryBuilder method) rf_value() (in module py3plex.core.HINMINE.decomposition), [1] RGB_to_hex() (in module py3plex.visualization.colors), [1] right (py3plex.dsl.Comparison attribute), [1] root_var (py3plex.dsl.PatternPlan attribute), [1] rows (py3plex.dsl.PatternQueryResult property) Rule (class in py3plex.algorithms.hedwig.core.rule), [1] rule_kernel() (in module py3plex.algorithms.hedwig), [1] rule_report() (py3plex.algorithms.hedwig.core.rule.Rule method), [1] ruleset_examples_json() (py3plex.algorithms.hedwig.core.rule.Rule static method), [1] ruleset_report() (py3plex.algorithms.hedwig.core.rule.Rule static method), [1] run() (in module py3plex.algorithms.hedwig), [1] (py3plex.dsl.DynamicsBuilder method) run_infomap() (in module py3plex.algorithms.community_detection.community_wrapper), [1] run_learner() (in module py3plex.algorithms.hedwig), [1] run_PPR() (in module py3plex.algorithms.node_ranking), [1]

S

samples() (py3plex.dsl.NullModelBuilder method) save_edgelist() (in module py3plex.core.parsers), [1] save_gpickle() (in module py3plex.core.parsers), [1] save_multiedgelist() (in module py3plex.core.parsers), [1] save_network() (py3plex.core.multinet.multi_layer_network method), [1] SBMMetadata (class in py3plex.core.random_generators), [1] SchemaProvider (class in py3plex.dsl) SCORE (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] seed (py3plex.dsl.DynamicsStmt attribute), [1] (py3plex.dsl.NullModelStmt attribute), [1] (py3plex.dsl.UQConfig attribute), [1] SEED (py3plex.uncertainty.ResamplingStrategy attribute), [1] (py3plex.uncertainty.types.ResamplingStrategy attribute), [1] seed() (py3plex.dsl.DynamicsBuilder method) (py3plex.dsl.NullModelBuilder method) seed_fraction (py3plex.dsl.DynamicsStmt attribute), [1] seed_query (py3plex.dsl.DynamicsStmt attribute), [1] select (py3plex.dsl.ExtendedQuery attribute), [1] (py3plex.dsl.Query attribute), [1] select() (py3plex.dsl.QueryBuilder method) select_cols (py3plex.dsl.SelectStmt attribute), [1] select_high_degree_nodes() (in module py3plex.dsl) select_nodes_by_layer() (in module py3plex.dsl) SelectStmt (class in py3plex.dsl) serialize_to_edgelist() (py3plex.core.multinet.multi_layer_network method), [1] set_attribute_type() (py3plex.dsl.TypeEnvironment method) set_computed_type() (py3plex.dsl.TypeEnvironment method) set_node_attribute() (py3plex.core.multinet.multi_layer_network method), [1] set_of() (py3plex.dsl.LayerConstraint static method) set_partial_fit_request() (py3plex.wrappers.benchmark_nodes.TopKRanker method), [1] set_predict_request() (py3plex.wrappers.benchmark_nodes.TopKRanker method), [1] set_score_request() (py3plex.wrappers.benchmark_nodes.TopKRanker method), [1] set_uncertainty_config() (in module py3plex.uncertainty) (in module py3plex.uncertainty.context) setup_logging() (in module py3plex.logging_config), [1] severity (py3plex.dsl.Diagnostic attribute), [1] shortest() (py3plex.dsl.P static method) signrank() (in module py3plex.algorithms.statistics.bayesiantests), [1] signrank_MC() (in module py3plex.algorithms.statistics.bayesiantests), [1] signtest() (in module py3plex.algorithms.statistics.bayesiantests), [1] signtest_MC() (in module py3plex.algorithms.statistics.bayesiantests), [1] Similarity (py3plex.algorithms.hedwig.learners.bottomup.BottomUpLearner attribute), [1] (py3plex.algorithms.hedwig.learners.learner.Learner attribute), [1] similarity() (py3plex.algorithms.hedwig.core.rule.Rule method), [1] size() (py3plex.algorithms.hedwig.core.rule.Rule method), [1] size_distribution() (in module py3plex.algorithms.community_detection.community_measures), [1] sort() (py3plex.dsl.QueryBuilder method) source (py3plex.dsl.PathStmt attribute), [1] span (py3plex.dsl.Diagnostic attribute), [1] (py3plex.dsl.SuggestedFix attribute), [1] sparse2graph() (in module py3plex.wrappers.benchmark_nodes), [1] sparse_page_rank() (in module py3plex.algorithms.node_ranking), [1] (in module py3plex.algorithms.node_ranking.node_ranking), [1]

sparse_to_px() (py3plex.core.multinet.multi_layer_network method), [1] special (py3plex.dsl.ConditionAtom attribute), [1] specialize() (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] specialize_add_relation() (py3plex.algorithms.hedwig.learners.learner.Learner method), [1] SpecialPredicate (class in py3plex.dsl) split_to_indices() (py3plex.core.HINMINE.dataStructures.HeterogeneousInformationNetwork method), [1] split_to_layers() (in module py3plex.core.supporting), [1] (py3plex.core.multinet.multi_layer_network method), [1] split_to_parts() (py3plex.core.HINMINE.dataStructures.HeterogeneousInformationNetwork method), [1] spread_percent_hyper (in module py3plex.algorithms.node_ranking), [1] spread_step_hyper (in module py3plex.algorithms.node_ranking), [1] spreading_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] src (py3plex.dsl.PatternEdge attribute), [1] src_layer (py3plex.dsl.EdgeLayerConstraint attribute), [1] stability (py3plex.uncertainty.CommunityStats attribute) (py3plex.uncertainty.types.CommunityStats attribute) start() (py3plex.visualization.fa2.forceatlas2.Timer method), [1] StatMatrix (class in py3plex.uncertainty) (class in py3plex.uncertainty.types) stats (py3plex.profiling.PerformanceMonitor attribute), [1] StatSeries (class in py3plex.uncertainty) (class in py3plex.uncertainty.types) Status (class in py3plex.algorithms.community_detection.community_louvain), [1] std (py3plex.uncertainty.StatMatrix attribute) (py3plex.uncertainty.StatSeries attribute) (py3plex.uncertainty.types.StatMatrix attribute) (py3plex.uncertainty.types.StatSeries attribute) steps (py3plex.dsl.DynamicsStmt attribute), [1] (py3plex.dsl.ExecutionPlan attribute), [1] stochastic_normalization() (in module py3plex.algorithms.node_ranking), [1] (in module py3plex.algorithms.node_ranking.node_ranking), [1] stochastic_normalization_hin() (in module py3plex.algorithms.node_ranking.node_ranking), [1] stop() (py3plex.visualization.fa2.forceatlas2.Timer method), [1] str() (py3plex.dsl.Param static method) strongGravity() (in module py3plex.visualization.fa2.fa2util), [1] subgraph_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] subnetwork() (py3plex.core.multinet.multi_layer_network method), [1] suggested_fix (py3plex.dsl.Diagnostic attribute), [1] SuggestedFix (class in py3plex.dsl) suggestion (py3plex.dsl.UnknownAttributeError attribute) (py3plex.dsl.UnknownLayerError attribute) (py3plex.dsl.UnknownMeasureError attribute) suggestions (py3plex.exceptions.Py3plexException attribute), [1] summarize() (py3plex.dsl.QueryBuilder method) summarize_aggs (py3plex.dsl.SelectStmt attribute), [1] summary() (py3plex.core.multinet.multi_layer_network method), [1] super_classes() (py3plex.algorithms.hedwig.core.kb.ExperimentKB method), [1] SUPPORT (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] supported_formats() (in module py3plex.io.api), [1] supports_operator() (py3plex.dsl.AttrType method) supra_adjacency_matrix_plot() (in module py3plex.visualization.multilayer), [1] supra_degree_centrality() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] supra_laplacian_spectrum() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] supra_matrix (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank attribute), [1]

T

t0 (py3plex.dsl.TemporalContext attribute), [1] t1 (py3plex.dsl.TemporalContext attribute), [1] t_score() (in module py3plex.algorithms.hedwig.stats.scorefunctions), [1] table_to_latex() (in module py3plex.visualization.benchmark_visualizations), [1] Target (class in py3plex.dsl) TARGET (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] target (py3plex.dsl.PathStmt attribute), [1] (py3plex.dsl.QueryResult attribute) (py3plex.dsl.SelectStmt attribute), [1] targeted_layer_removal() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] temporal_context (py3plex.dsl.SelectStmt attribute), [1] (py3plex.dsl.TrajectoriesStmt attribute), [1] TemporalContext (class in py3plex.dsl) terms (py3plex.dsl.LayerExpr attribute), [1] test() (py3plex.algorithms.hedwig.stats.validate.Validate method), [1] test_scale_free() (py3plex.core.multinet.multi_layer_network method), [1] timed_section() (in module py3plex.profiling), [1] Timer (class in py3plex.visualization.fa2.forceatlas2), [1] to() (py3plex.dsl.CompareBuilder method) (py3plex.dsl.DynamicsBuilder method) (py3plex.dsl.NullModelBuilder method) (py3plex.dsl.PathBuilder method) (py3plex.dsl.QueryBuilder method) (py3plex.dsl.TrajectoriesBuilder method) to_arrow() (py3plex.dsl.QueryResult method) to_ast() (py3plex.dsl.CompareBuilder method) (py3plex.dsl.DynamicsBuilder method) (py3plex.dsl.NullModelBuilder method) (py3plex.dsl.PathBuilder method) (py3plex.dsl.QueryBuilder method) (py3plex.dsl.TrajectoriesBuilder method) to_condition_expr() (py3plex.dsl.BooleanExpression method) to_dict() (py3plex.dsl.EdgeLayerConstraint method) (py3plex.dsl.LayerConstraint method) (py3plex.dsl.MatchRow method) (py3plex.dsl.PatternEdge method) (py3plex.dsl.PatternGraph method) (py3plex.dsl.PatternNode method) (py3plex.dsl.PatternPlan method) (py3plex.dsl.Predicate method) (py3plex.dsl.QueryResult method) (py3plex.uncertainty.StatSeries method) (py3plex.uncertainty.types.StatSeries method)

to_dsl() (py3plex.dsl.QueryBuilder method) to_edges() (py3plex.dsl.PatternQueryResult method) to_homogeneous_hypergraph() (py3plex.core.multinet.multi_layer_network method), [1] to_json() (py3plex.algorithms.hedwig.core.rule.Rule static method), [1] (py3plex.core.multinet.multi_layer_network method), [1] to_networkx() (py3plex.core.multinet.multi_layer_network method), [1] (py3plex.dsl.QueryResult method) to_nodes() (py3plex.dsl.PatternQueryResult method) to_pandas() (py3plex.dsl.PatternQueryResult method) (py3plex.dsl.QueryResult method) to_sparse_matrix() (py3plex.core.multinet.multi_layer_network method), [1] to_subgraph() (py3plex.dsl.PatternQueryResult method) top_k() (py3plex.dsl.QueryBuilder method) TopKRanker (class in py3plex.wrappers.benchmark_nodes), [1] total_communicability() (py3plex.algorithms.multilayer_algorithms.centrality.MultilayerCentrality method), [1] total_weight (py3plex.algorithms.community_detection.community_louvain.Status attribute), [1] track (py3plex.dsl.DynamicsStmt attribute), [1] trajectories (py3plex.dsl.ExtendedQuery attribute), [1] trajectories() (py3plex.dsl.Q static method) TrajectoriesBuilder (class in py3plex.dsl) TrajectoriesStmt (class in py3plex.dsl) transition_matrix (py3plex.algorithms.multilayer_algorithms.multixrank.MultiXRank attribute), [1] triangle() (py3plex.dsl.PatternQueryBuilder method) type_hint (py3plex.dsl.ParamRef attribute), [1] type_info (py3plex.dsl.ExplainResult attribute), [1] TypeEnvironment (class in py3plex.dsl) TypeMismatchError

U

UnaryPredicate (class in py3plex.algorithms.hedwig.core.predicate), [1] uncertainty (py3plex.dsl.ComputeItem attribute), [1] uncertainty() (py3plex.dsl.QueryBuilder method) uncertainty_disabled() (in module py3plex.uncertainty.context) uncertainty_enabled() (in module py3plex.uncertainty) (in module py3plex.uncertainty.context) UncertaintyConfig (class in py3plex.uncertainty) (class in py3plex.uncertainty.types) UncertaintyMode (class in py3plex.uncertainty) (class in py3plex.uncertainty.types) unique_redundant_edges() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] UNKNOWN (py3plex.dsl.AttrType attribute)

UnknownAttributeError UnknownLayerError UnknownMeasureError unregister() (PluginRegistry method) unregister_operator() (in module py3plex.dsl) updateMassAndGeometry() (py3plex.visualization.fa2.fa2util.Region method), [1] UQ (class in py3plex.dsl) uq() (py3plex.dsl.QueryBuilder method) uq_config (py3plex.dsl.SelectStmt attribute), [1] UQConfig (class in py3plex.dsl) URIS (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] using() (py3plex.dsl.CompareBuilder method)

V

Validate (class in py3plex.algorithms.hedwig.stats.validate), [1] validate_csv_columns() (in module py3plex.validation), [1] validate_edgelist_format() (in module py3plex.validation), [1] validate_file_exists() (in module py3plex.validation), [1] validate_input_type() (in module py3plex.validation), [1] validate_label_propagation() (in module py3plex.algorithms.network_classification), [1] validate_multiedgelist_format() (in module py3plex.validation), [1] validate_multilayer_input() (in module py3plex.utils), [1] validate_network_data() (in module py3plex.validation), [1] value (py3plex.dsl.LayerConstraint attribute), [1] (py3plex.dsl.Predicate attribute), [1] var (py3plex.dsl.PatternNode attribute), [1]

variable_plans (py3plex.dsl.PatternPlan attribute), [1] VERBOSE (py3plex.algorithms.hedwig.core.settings.Defaults attribute), [1] versatility_centrality() (in module py3plex.algorithms.statistics.multilayer_statistics), [1] versatility_score() (in module py3plex.algorithms.centrality_toolkit) VisualizationError, [1] visualize_embedding() (in module py3plex.visualization.embedding_visualization.embedding_visualization), [1] visualize_matrix() (py3plex.core.multinet.multi_layer_network method), [1] visualize_multilayer_network() (in module py3plex.visualization.multilayer), [1] visualize_network() (py3plex.core.multinet.multi_layer_network method), [1] visualize_ricci_core() (py3plex.core.multinet.multi_layer_network method), [1] visualize_ricci_layers() (py3plex.core.multinet.multi_layer_network method), [1] visualize_ricci_supra() (py3plex.core.multinet.multi_layer_network method), [1]

W

warn_if_deprecated() (in module py3plex.utils), [1] warnings (py3plex.dsl.ExecutionPlan attribute), [1] where (py3plex.dsl.SelectStmt attribute), [1] (py3plex.dsl.TrajectoriesStmt attribute), [1] where() (py3plex.dsl.PatternEdgeBuilder method) (py3plex.dsl.PatternNodeBuilder method) (py3plex.dsl.QueryBuilder method) (py3plex.dsl.TrajectoriesBuilder method) wildcard() (py3plex.dsl.LayerConstraint static method)

window() (py3plex.dsl.QueryBuilder method) window_spec (py3plex.dsl.SelectStmt attribute), [1] with_params() (py3plex.dsl.NullModelBuilder method) (py3plex.dsl.PathBuilder method) with_states() (py3plex.dsl.DynamicsBuilder method) within() (py3plex.dsl.EdgeLayerConstraint static method) within_layer() (py3plex.dsl.PatternEdgeBuilder method) wracc() (in module py3plex.algorithms.hedwig.stats.scorefunctions), [1] write() (in module py3plex.io.api), [1]

Z

z_score() (in module py3plex.algorithms.hedwig.stats.scorefunctions), [1]

zscore() (py3plex.dsl.QueryBuilder method) zscore_attrs (py3plex.dsl.SelectStmt attribute), [1]